PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn359861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 186aa    MW: 20487.8 Da    PI: 6.2228
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn359861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.47.7e-22773166
      DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66
                +C aCk+lrrkC+k+Cv+apyf++++ +++fa++hk+FGasnv+kll++lp  + ++ ++sl  +A 
  Achn359861  7 PCGACKFLRRKCVKGCVFAPYFCHDEgASHFAAIHKVFGASNVSKLLAHLPVVNLQAQLASLKEQAA 73
                7***********************9989***********************9999999999976654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.5566110IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-20773IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVK GCVFAPYFCH DEGASHFAAI HKVFGASNVS KLLAHLPVVN  60
LQAQLASLKE QAARTFSANP SERFNGKFPN PPQDVQSWFQ CENSSRMPQL DQNILFGNFG  120
NNPYFENGHM NPNSFPIKPE ENASFSGFEE ASQSMDSIDL QTNGQWPFQD DANELPSMAF  180
GYIQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263533.18e-72PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB64e-36LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA5AIW93e-72A5AIW9_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g03020.t013e-71(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.12e-37LBD family protein